Introduction | Installation | From CRAN | From GitHub | The Experiment Object | Creating an experiment | Loading Data | Scoring Data | Data Structure | Adding Scored Data to Experiment | Removing Data from Experiment | Summarizing the Experiment | Updating the Experiment | Saving the Experiment | Experiment Pipelines | Google Sheets Formatting | Unblinding Functions | Data Visualization | Overview | $ Operator in SqueakR | Ethnogram-Style Plots | Standard Ethnogram | Tonality Ethnogram (Split) | 3D Cluster Plot | 3D Surface Plot | 2D Contour Plot | Sunburst Plots | Density-Style Plots | Frequency Density Plot (Stacked) | Frequency Density Plot (Split) | Custom Label Density Plot (Stacked) | Custom Label Density Plot (Split) | Duration Density Plot (Stacked) | Histogram Plot | Box Plot | Correlation Plot | Preview Dataset Visualizations | Data Analysis | Replicating analysis | Inter-group comparison plots | Inter-group Summary | Inter-group ANOVA | SqueakR Dashboard | Future Directions
Package: SqueakR 1.3.0
Simon Ogundare
SqueakR: An Experiment Interface for 'DeepSqueak' Bioacoustics Research
Data processing and visualizations for rodent vocalizations exported from 'DeepSqueak'. These functions are compatible with the 'SqueakR' Shiny Dashboard, which can be used to visualize experimental results and analyses.
Authors:
SqueakR_1.3.0.tar.gz
SqueakR_1.3.0.zip(r-4.7-any)SqueakR_1.3.0.zip(r-4.6-any)SqueakR_1.3.0.zip(r-4.5-any)
SqueakR_1.3.0.tgz(r-4.6-any)SqueakR_1.3.0.tgz(r-4.5-any)
SqueakR_1.3.0.tar.gz(r-4.7-any)SqueakR_1.3.0.tar.gz(r-4.6-any)
SqueakR_1.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SqueakR/json (API)
| # Install 'SqueakR' in R: |
| install.packages('SqueakR', repos = c('https://osimon81.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/osimon81/squeakr/issues
Pkgdown/docs site:https://osimon81.github.io
Datasets:
- deepsqueak_data - DeepSqueak Example Data
Last updated from:c6e94ddc06. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 191 | ||
| source / vignettes | OK | 235 | ||
| linux-release | OK | 190 | ||
| macos-release | OK | 195 | ||
| macos-oldrel | OK | 173 | ||
| windows-devel | OK | 125 | ||
| windows-release | OK | 113 | ||
| windows-oldrel | OK | 121 | ||
| wasm-release | OK | 339 |
Exports:add_timepoint_dataadd_to_experimentanalyze_factorautosqueakRpipelinecreate_experimentdescribe_experimentplotClustersplotContoursplotCorrelationsplotDeltaHistogramplotDensitySplitByCustomplotDensitySplitByDurationplotDensitySplitByFrequencyplotDensityStackedByCustomplotDensityStackedByDurationplotDensityStackedByFrequencyplotEthnogramplotEthnogramSplitByTonalityplotPrincipalBoxplotplotSummaryPDFplotSunburstAnimalsplotSunburstExperimentersplotSurfaceremove_experiment_datasave_experimentscore_timepoint_datasemisqueakRpipelinesqueakrANOVAsqueakRDashboardsqueakrSummaryunblind_all_idsunblind_data_idunblind_data_nameupdate_experiment
Dependencies:abindaskpassbackportsbase64encbayestestRbootbroombslibcachemcarcarDatacellrangerclicolorspacecommonmarkcorrplotcowplotcpp11crayoncrosstalkcurldata.tabledatawizardDerivdigestdoBydplyreffectsizeevaluatefarverfastmapfontawesomeforecastFormulafracdifffsgarglegenericsggcorrplotggeasygghighlightggplot2ggpubrggrepelggsciggsignifgluegoogledrivegooglesheets4gridExtragtablehighrhmshtmltoolshtmlwidgetshttpuvhttridsinsightisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmemoisemgcvmimeminqamodelrnlmenloptrnnetnumDerivopensslotelparameterspbkrtestperformancepillarpkgconfigplotlyplyrpolynomprettyunitsprogresspromisespurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreadxlreformulasrematchrematch2reportreshape2rlangrlistrmarkdownrstatixS7sassscalesshinyshinydashboardsourcetoolsSparseMstringistringrsurvivalsystibbletidyrtidyselecttimeDatetinytexurcautf8uuidvctrsviridisLitewithrxfunXMLxtableyamlzoo
